NASC Stock Detail Page
NASC ID: N624458
Name: SALK_124458
ABRC stock number: SALK_124458
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. February 2003 TAIR gene annotation - At1g47560 F16N3.1 6 Intron F16N3.1 6 Intron. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2. Associated Polymorphisms: SALKseq_124458.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G47560.1 (at chr 1 pos 17471729 (C/17471729-17471788) on the TAIR10). The sequences' 1-60 bps mapped on the genome, 60-78 bps onto the T-DNA. Pools P 55, R 56, C 53 N 60. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO390246. SALKseq_124458.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G47550.1 (around chr 1 pos 17462500 on the TAIR10). The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO416141. SALKseq_124458.101 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G26150.1 (at chr 1 pos 9042288 (W/9042224-9042288) on the TAIR10). The sequences' 1-65 bps mapped on the genome, 58-79 bps onto the T-DNA. Pools P 55, R 56, C 53 N 60. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO393596. SALKseq_124458.2 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT2G35850.1 and AT2G35859 (at chr 2 pos 15058889 (C/15058889-15058950) on the TAIR10). The sequences' 1-62 bps mapped on the genome, 59-79 bps onto the T-DNA. Pools P 55, R 56, C 53 N 60. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO396936.
Donation Date: 2003-03-11
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_124458
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: Homozygous/confirmed line: SALK_124458C.
Status | Price (£) |
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Currently unavailable | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.