NASC

NASC ID: N627437

Name: SALK_127437

ABRC stock number: SALK_127437

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

Associated Polymorphisms:

SALKseq_127437.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT3G13560.1 (at chr 3 pos 4428282 (W/4428218-4428282) on the TAIR10). The sequences' 1-65 bps mapped on the genome, 60-77 bps onto the T-DNA. Pools P 58, R 56, C 55 N 56. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO350250.

SALKseq_127437.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT1G55350.4 (at chr 1 pos 20665323 (W/20665278-20665323) on the TAIR10). The sequences' 1-46 bps mapped on the genome, 50-72 bps onto the T-DNA. Pools P 58, R 56, C 55 N 56. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO343558.

SALKseq_127437.2 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the UTR 3' of AT2G18890.1 (at chr 2 pos 8186850 (W/8186794-8186850) on the TAIR10). The sequences' 1-57 bps mapped on the genome, 54-79 bps onto the T-DNA. Pools P 58, R 56, C 55 N 56. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO346905.

Donation Date: 2003-01-31

Donated by:

The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_127437

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: Homozygous/confirmed line: SALK_127437C.

Status	Price (£)
Available	£11.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene:	Allele:	Locus:	AGI code:
			AT1G55350 AT2G18890 At3g13560

EMBL accession:

BZ355769

Phenotype

Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2.

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.