NASC

NASC ID: N627604

Name: SALK_127604

ABRC stock number: SALK_127604

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

January 2003 TAIR gene annotation - At1g71720 F14O23.10 L300-5' Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2.

Associated Polymorphisms:

SALKseq_127604.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT1G71720.1 (at chr 1 pos 26983445 (C/26983445-26983505) on the TAIR10). The sequences' 1-61 bps mapped on the genome, 57-79 bps onto the T-DNA. Pools P 58, R 60, C 51 N 51. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO393765.

SALKseq_127604.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT2G27840.1 (at chr 2 pos 11863220 (C/11863220-11863265) on the TAIR10). The sequences' 1-46 bps mapped on the genome, 43-79 bps onto the T-DNA. Pools P 58, R 60, C 51 N 51. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO397102.

SALKseq_127604.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G25520.2 (at chr 5 pos 8888480 (C/8888480-8888540) on the TAIR10). The sequences' 1-61 bps mapped on the genome, 58-79 bps onto the T-DNA. Pools P 58, R 60, C 51 N 51. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO400448.

Donation Date: 2003-01-31

Donated by:

The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_127604

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: Homozygous/confirmed line: SALK_127604C.

Status	Price (£)
Available	£10.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene:	Allele:	Locus:	AGI code:
			AT2G27840 AT5G25520 At1g71720

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.