NASC Stock Detail Page
NASC ID: N629306
Name: SALK_129306
ABRC stock number: SALK_129306
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. January 2003 TAIR gene annotation - At5g49290 K21P3.17 Exon Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2. Associated Polymorphisms: SALKseq_129306.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G49290.1 (at chr 5 pos 19983578 (W/19983516-19983578) on the TAIR10). The sequences' 1-63 bps mapped on the genome, 58-79 bps onto the T-DNA. Pools P 60, R 57, C 51 N 59. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO357014. SALKseq_129306.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G55110.1 (at chr 1 pos 20561326 (C/20561326-20561389) on the TAIR10). The sequences' 1-64 bps mapped on the genome, 61-79 bps onto the T-DNA. Pools P 60, R 57, C 51 N 59. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO343649. SALKseq_129306.4 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT4G13250.1 (at chr 4 pos 7685905 (W/7685876-7685905) on the TAIR10). The sequences' 1-30 bps mapped on the genome, 35-73 bps onto the T-DNA. Pools P 60, R 57, C 51 N 59. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO346994. SALKseq_129306.5 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G36185 (at chr 5 pos 14242563 (C/14242563-14242641) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 60, R 57, C 51 N 59. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO350340. SALKseq_129306.6 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G36200.1 (at chr 5 pos 14245126 (W/14245076-14245126) on the TAIR10). The sequences' 1-51 bps mapped on the genome. Pools P 60, R 57, C 51 N 59. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO353687.
Donation Date: 2003-01-31
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_129306
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: Homozygous/confirmed line: N65505.
| Status | Price (£) |
|---|---|
| Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.