NASC

NASC ID: N633653

Name: SALK_133653

ABRC stock number: SALK_133653

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

February 2003 TAIR gene annotation - At4g33560 T16L1.5 0 L300-5' T16L1.5 0 L300-5'. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2.

Associated Polymorphisms:

SALKseq_133653.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT4G33560.1 (at chr 4 pos 16135205 (C/16135205-16135261) on the TAIR10). The sequences' 1-57 bps mapped on the genome, 55-78 bps onto the T-DNA. Pools P 32, R 40, C 31 N 38. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO347183.

SALKseq_133653.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT3G27180.1=P355 and AT3G27190.1=UTR3 (at chr 3 pos 10033869 (W/10033792-10033869) on the TAIR10). The sequences' 1-78 bps mapped on the genome. Pools P 32, R 40, C 31 N 38. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO343839.

SALKseq_133653.101 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT4G35320.1 (at chr 4 pos 16806662 (W/16806606-16806662) on the TAIR10). The sequences' 1-57 bps mapped on the genome, 57-78 bps onto the T-DNA. Pools P 32, R 40, C 31 N 38. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO350530.

Donation Date: 2003-03-11

Donated by:

The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_133653

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: Homozygous/confirmed line: SALK_133653C.

Status	Price (£)
Available	£11.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene:	Allele:	Locus:	AGI code:
			AT3G27180 AT3G27190 AT4G35320 At4g33560

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.