NASC

NASC ID: N634049

Name: SALK_134049

ABRC stock number: SALK_134049

Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material.

February 2003 TAIR gene annotation - At5g52110 MSG15.2 1 Exon MSG15.2 1 Exon. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2.

Associated Polymorphisms:

SALKseq_134049.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT5G52110.1 (at chr 5 pos 21174155 (W/21174098-21174155) on the TAIR10). The sequences' 1-59 bps mapped on the genome, 61-79 bps onto the T-DNA. Pools P 56, R 60, C 59 N 56. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO353897.

SALKseq_134049.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT2G45690.1 (at chr 2 pos 18825855 (C/18825855-18825898) on the TAIR10). The sequences' 1-44 bps mapped on the genome, 59-79 bps onto the T-DNA. Pools P 56, R 60, C 59 N 56. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO347206.

SALKseq_134049.2 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT2G46270.1 (at chr 2 pos 19002394 (W/19002335-19002394) on the TAIR10). The sequences' 1-60 bps mapped on the genome, 57-79 bps onto the T-DNA. Pools P 56, R 60, C 59 N 56. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO350553.

Donation Date: 2003-03-11

Donated by:

The Salk Institute for Biological Studies Joseph R. Ecker

Donor Number: SALK_134049

Part of : SALK lines

Stock type: individual line

Material type: seed

Comment: Homozygous/confirmed line: SALK_134049C.

Status	Price (£)
Available	£11.00

Germplasm Info

Mutagen: ema

Background: Col-0 (N60000)

Segregation status: segregating

Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2

Associated Polymorphisms

When available, select a locus to display it at the AIP or view the EMBL record at the EBI.

Gene:	Allele:	Locus:	AGI code:
			AT2G45690 AT2G46270 At5g52110

EMBL accession:

BZ383520

References

Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.