NASC Stock Detail Page
NASC ID: N634424
Name: SALK_134424
ABRC stock number: SALK_134424
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_134424.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G29965.1 (at chr 1 pos 10499221 (C/10499221-10499281) on the TAIR10). The sequences' 1-61 bps mapped on the genome, 58-78 bps onto the T-DNA. Pools P 45, R 47, C 44 N 42. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO410776. SALKseq_134424.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G36160.1 (at chr 1 pos 13541888 (C/13541888-13541933) on the TAIR10). The sequences' 1-46 bps mapped on the genome, 43-62 bps onto the T-DNA. Pools P 45, R 47, C 44 N 42. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO414127. SALKseq_134424.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G36180.1 (at chr 1 pos 13556784 (C/13556784-13556844) on the TAIR10). The sequences' 1-61 bps mapped on the genome, 61-78 bps onto the T-DNA. Pools P 45, R 47, C 44 N 42. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO343881. SALKseq_134424.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G17200.1 (at chr 5 pos 5654599 (C/5654599-5654629) on the TAIR10). The sequences' 1-31 bps mapped on the genome, 56-78 bps onto the T-DNA. Pools P 45, R 47, C 44 N 42. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO347224.
Donation Date: 2003-03-11
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_134424
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: Homozygous/confirmed line: SALK_134424C.
| Status | Price (£) |
|---|---|
| Available to order at NASC | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2.
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.