NASC Stock Detail Page
NASC ID: N639746
Name: SALK_139746
ABRC stock number: SALK_139746
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. February 2003 TAIR gene annotation - At1g03475 F21B7.1 0 R300-5' F21B7.1 0 R300-5'. Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2. Associated Polymorphisms: SALKseq_139746.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Promoter 500bps of AT1G03475.1 (at chr 1 pos 871313 (W/871262-871313) on the TAIR10). The sequences' 1-53 bps mapped on the genome, 57-78 bps onto the T-DNA. Pools P 14, R 13, C 15 N 14. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO354170. SALKseq_139746.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT2G25730.1 (at chr 2 pos 10963748 (C/10963748-10963801) on the TAIR10). The sequences' 1-54 bps mapped on the genome, 62-79 bps onto the T-DNA. Pools P 14, R 13, C 15 N 14. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO357502. SALKseq_139746.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT2G17380.1 (at chr 2 pos 7553254 (W/7553198-7553254) on the TAIR10). The sequences' 1-57 bps mapped on the genome, 61-79 bps onto the T-DNA. Pools P 14, R 13, C 15 N 14. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO360849. SALKseq_139746.3 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT4G30590.1=P355 and AT4G30600.1=UTR3 (at chr 4 pos 14937433 (W/14937355-14937433) on the TAIR10). The sequences' 1-79 bps mapped on the genome. Pools P 14, R 13, C 15 N 14. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO364206.
Donation Date: 2003-03-11
Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_139746
Part of : SALK lines
Stock type: individual line
Material type: seed
Comment: Homozygous/confirmed line: SALK_139746C.
Status | Price (£) |
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Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
Gene: | Allele: | Locus: | AGI code: |
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References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.