NASC Stock Detail Page
NASC ID: N588485
Name: SALK_088485
ABRC stock number: SALK_088485
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_088485.0 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT1G62510.1=P355 and AT1G62520.1=P355 (at chr 1 pos 23139759 (C/23139759-23139836) on the TAIR10). The sequences' 1-78 bps mapped on the genome. Pools P 76, R 80, C 79 N 73. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO435362. SALKseq_088485.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT2G21905 and AT2G21910.1 (at chr 2 pos 9340863 (W/9340806-9340863) on the TAIR10). The sequences' 1-58 bps mapped on the genome, 61-78 bps onto the T-DNA. Pools P 76, R 80, C 79 N 73. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO438665. SALKseq_088485.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the Intergenic between AT3G32389 and AT3G32391.1=P355 (at chr 3 pos 13339079 (W/13339016-13339079) on the TAIR10). The sequences' 1-64 bps mapped on the genome, 57-78 bps onto the T-DNA. Pools P 76, R 80, C 79 N 73. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO418793. SALKseq_088485.3 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT4G23700.1 (at chr 4 pos 12343935 (W/12343858-12343935) on the TAIR10). The sequences' 1-78 bps mapped on the genome. Pools P 76, R 80, C 79 N 73. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO422109. SALKseq_088485.4 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G45560.1 (at chr 5 pos 18470246 (W/18470214-18470246) on the TAIR10). The sequences' 1-33 bps mapped on the genome, 32-73 bps onto the T-DNA. Pools P 76, R 80, C 79 N 73. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO425426.
Donation Date: 2002-01-09
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_088485
Part of : SALK lines
Stock type: individual line
Material type: seed
| Status | Price (£) |
|---|---|
| Available to order at NASC | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.