NASC Stock Detail Page
NASC ID: N635396
Name: SALK_135396
ABRC stock number: SALK_135396
Description: Sequence-indexed T-DNA insertion line generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2; kanamycin was employed for selection of plants carrying a T-DNA (please note that in many lines, the kan resistance trait has been cosuppressed, so that insertion plants may not be kanamycin resistant); each T1 transformant has been maintained individually at SALK; the DNA sequence of each T-DNA flanking region was generated from seedlings grown from the same sample of seeds as that provided for distribution (T3). NOTE: kanamycin resistance gene may be silenced; PCR- or hybridization-based segregation analysis is required to confirm presence of insertion; may be segregating for phenotypes that are not linked to the insertion; may have additional insertions potentially segregating. Please cite the Alonso et al. reference linked to this stock and acknowledge NASC/ABRC for distributing the seeds in all presentations and publications utilizing this material. Associated Polymorphisms: SALKseq_135396.1 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT1G32890.1 (at chr 1 pos 11915811 (W/11915734-11915811) on the TAIR10). The sequences' 1-78 bps mapped on the genome, 78-95 bps onto the T-DNA. Pools P 43, R 48, C 42 N 41. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO360646. SALKseq_135396.2 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT1G61170.1 (at chr 1 pos 22549651 (W/22549580-22549651) on the TAIR10). The sequences' 1-72 bps mapped on the genome, 76-94 bps onto the T-DNA. Pools P 43, R 48, C 42 N 41. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO363995. SALKseq_135396.4 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 5' of AT3G27325.1 (at chr 3 pos 10095846 (C/10095846-10095921) on the TAIR10). The sequences' 1-76 bps mapped on the genome, 75-95 bps onto the T-DNA. Pools P 43, R 48, C 42 N 41. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO367342. SALKseq_135396.5 : Genbank Annotation 2015-02-18 - This genomic-terminal sequence of a TDNA insertion region lies within the UTR 3' of AT3G26890.1 (at chr 3 pos 9907452 (C/9907452-9907531) on the TAIR10). The sequences' 1-80 bps mapped on the genome, 78-95 bps onto the T-DNA. Pools P 43, R 48, C 42 N 41. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO370693. SALKseq_135396.6 : Genbank Annotation 2015-02-18 -This genomic-terminal sequence of a TDNA insertion region lies within the CDS of AT5G54680.1 (at chr 5 pos 22218878 (W/22218830-22218878) on the TAIR10). The sequences' 1-49 bps mapped on the genome, 59-78 bps onto the T-DNA. Pools P 43, R 48, C 42 N 41. The insertion site is at the 3' end of the sequence mapping.. Genbank Acc. KO374042.
Donation Date: 2003-03-11
| Donated by: | The Salk Institute for Biological Studies Joseph R. Ecker |
Donor Number: SALK_135396
Part of : SALK lines
Stock type: individual line
Material type: seed
| Status | Price (£) |
|---|---|
| Available | £11.00 |
Germplasm Info
Mutagen: ema
Background: Col-0 (N60000)
Segregation status: segregating
Transformation method: Vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2
Associated Polymorphisms
When available, select a locus to display it at the AIP or view the EMBL record at the EBI.
| Gene: | Allele: | Locus: | AGI code: |
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Phenotype
Single, segregating flank-tagged T3-generation T-DNA lines generated by vacuum infiltration of Columbia (Col) plants with Agrobacterium tumefaciens vector pROK2.
References
Alonso, J.M. et al. 2003. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301(5633):653-7.PubMed ID: 12893945.